A new update is ready to download for you. This version has a fix for the Xbox One controller issue on Windows 10. There is an option in game settings now to enable or disable using the Xbox One controller on Win10. You might need to disconnect your controller the first time in order to enable that option in settings and you should be good to go afterwards.
The levels with missing time information have been fixed and overall this build includes a few more minor bug fixes.
Have a great time being a Ninja!