Soooo, we got rid of the nifty script which potentially cured the problem with the Battle System Crash... This is because it was creating more problems than it was fixing. However, that means that the batte glitch maaaayyyy still happen, but SakifX9 tells me he made some adjustments which might prevent it.
This new update may make some of your save files not work anymore, and if that does happen then let me know because I am fully willing to go through and play the game and give you a save file that does work.
If there are any other glitches we should know about, then be sure to let us now in the appropriate forum. :)